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Active bugs for Bio-SamTools
Active bugs
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This queue is for tickets about the
Bio-SamTools CPAN distribution
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Maintainer(s)
LDS
Bugs
ID
Subject
Status
Severity
Last Updated
Broken in
Fixed in
116683
Bio-SamTools-1.43 is confused about what various SAMtools build dirs supply where - and so am I
new
4 years ago
116702
Re: Bio-SamTools-1.43 is confused about what various SAMtools build dirs supply where - and so am I
new
4 years ago
110409
Module v1.4.2 bug
new
5 years ago
81949
Documentation bug
open
5 years ago
101733
bam2bedgraph compile error (Fedora 21, stock gcc, etc.)
open
5 years ago
101735
Bio::DB:Sam won't read a particular BAM file
open
5 years ago
105418
Compile error under CentOS 6.6
open
5 years ago
98692
Feature request: support for samtools v1.0
open
5 years ago
106384
Bio-SamTools run error
open
5 years ago
101438
CIGAR parsing error in Bio::DB::Sam
new
6 years ago
89192
feature request: accessor for low level Alignment in AlignmentWrapper
new
7 years ago
88947
Re: Suggested patch for installation failure to find samtools headers in include/bam/ path
new
7 years ago
87175
Bio::DB::Sam problems
new
7 years ago
86069
Suggested patch for installation failure to find samtools headers in include/bam/ path
new
8 years ago
84656
Trouble installing BIo:DB:SAM tools
new
8 years ago
83974
max_pileup_cnt should be raised for coverage2bedGraph
new
Important
8 years ago
1.31
1.32
1.33
1.35
1.36
1.37
81118
Test failed for Bio::DB::Sam
new
Important
8 years ago
1.36
80688
behaviour of qpos in deletion regions
new
Wishlist
8 years ago
1.36
76279
-filter option doesn't function as documented (deprecated AUTOLOAD)
new
Important
9 years ago
1.33
73781
Debian binary-without-manpage lintian warning
new
Wishlist
9 years ago
1.33
73737
Allow calmd be called on an Alignment?
new
Wishlist
9 years ago
69903
Coverage and pileup functions corrupted by samtools core
open
Critical
9 years ago
1.29
68400
Uninstalling old version of Bio::DB::Sam
new
10 years ago
66387
Need to process CIGAR N in dna function
new
10 years ago
66209
Suggested change to coverage_from_pileup_fun in Sam.xs
new
10 years ago
66138
_coverage function should not count reads that skip the input region
new
10 years ago
57143
Deletions in Pileup
new
11 years ago
54562
Bio::DB::Sam segfaults when reading a BAM file without reading the header first
new
Important
11 years ago
1.10
54411
Re: CQ tag bug
new
11 years ago
54392
CQ tag bug
new
11 years ago
53705
$index undefined prior to coverage call
new
11 years ago
52905
Bio::DB::Sam objects crashes threads
new
11 years ago
52363
Inconsistent return values in Bio::DB::Sam->features method
new
11 years ago
1.07
51485
Missing character->value conversion in example SNP caller?
new
11 years ago
50532
Sam.pm croaks wrong path if not -e $bam_path
open
11 years ago
50653
Error in gbrowse2: Method abs_ref missing
new
Unimportant
11 years ago
1.05
49986
seq_ids returns only lower-case entry names
open
11 years ago