Bug #89192 for Bio-SamTools: feature request: accessor for low level Alignment in AlignmentWrapper

would be great to have an accessor for the the low-level Alignment object in the AlignmentWrapper API. That would make it possible e.g. to write alignments into a new file while reading them using the high-level API. Alternatively, there could be an option in the high-level API to return low-level Alignment objects rather than AlignmentWrapper when querying for alignments. Cheers, Frank -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.