| Subject: | go_perl-0.14 missing some files in the cpan distribution |
cpan installation of go_perl-0.14 displayed the following message
Writing /home/edeveaud/.cpan/Metadata
Running install for module 'GO::Parser'
Running make for C/CM/CMUNGALL/go-perl-0.14.tar.gz
Fetching with LWP:
http://cpan.panu.it/authors/id/C/CM/CMUNGALL/go-perl-0.14.tar.gz
Checksum for /home/edeveaud/.cpan/sources/authors/id/C/CM/CMUNGALL/go-perl-0.14.tar.gz ok
Scanning cache /home/edeveaud/.cpan/build for sizes
............................................................................DONE
DEL(1/2): /home/edeveaud/.cpan/build/BioPerl-1.6.1-_Y4U86
DEL(2/2): /home/edeveaud/.cpan/build/Bundle-CPAN-1.861-wqlGFg
CPAN.pm: Building C/CM/CMUNGALL/go-perl-0.14.tar.gz
Checking if your kit is complete...
Warning: the following files are missing in your kit:
GO/xsl/chadoxml_to_oboxml.xsl
GO/xsl/ipr_to_oboxml.xsl
GO/xsl/oboxml_filter.xsl
GO/xsl/oboxml_to_chadoxml.xsl
GO/xsl/oboxml_to_dig.xsl
GO/xsl/oboxml_to_godb_prestore.xsl
GO/xsl/oboxml_to_obd_prestore.xsl
GO/xsl/oboxml_to_obotext.xsl
GO/xsl/oboxml_to_owl.xsl
GO/xsl/oboxml_to_racer.xsl
GO/xsl/oboxml_to_simple_owl.xsl
GO/xsl/oboxml_to_summary_table.xsl
GO/xsl/owl_to_oboxml.xsl
GO/xsl/text_html.xsl
Please inform the author.
and finaly was impossible because some of the tests failling due to missing files. see:
Running make test
PERL_DL_NONLAZY=1 /mount/gensoft2/adm/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chadoxml at GO/Parsers/base_parser.pm line 39.
GO::Parsers::base_parser::throw('GO::Parsers::obo_parser=HASH(0x248cda0)', 'No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chad...') called at GO/Parsers/base_parser.pm line 341
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x248cda0)', './t/data/llm.obo') called at t/t170chadoxml.t line 45
t/t170chadoxml.t ......... Dubious, test returned 2 (wstat 512, 0x200)
Failed 9/9 subtests
t/t175chadoxml_oborel.t .. No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chadoxml at GO/Parsers/base_parser.pm line 39.
GO::Parsers::base_parser::throw('GO::Parsers::obo_parser=HASH(0x1dafda0)', 'No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chad...') called at GO/Parsers/base_parser.pm line 341
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x1dafda0)', './t/data/llm2.obo') called at t/t175chadoxml_oborel.t line 45
t/t175chadoxml_oborel.t .. Dubious, test returned 2 (wstat 512, 0x200)
Failed 9/9 subtests
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chadoxml at GO/Parsers/base_parser.pm line 39.
GO::Parsers::base_parser::throw('GO::Parsers::obo_parser=HASH(0xd40360)', 'No such file: GO/xsl/oboxml_to_chadoxml.xsl OR oboxml_to_chad...') called at GO/Parsers/base_parser.pm line 341
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0xd40360)', './t/data/go-with-local-id-mapping.obo') called at t/t260oborel_in_chado.t line 44
t/t260oborel_in_chado.t .. Dubious, test returned 2 (wstat 512, 0x200)
Failed 6/6 subtests
t/t270oborel_in_owl.t .... No such file: GO/xsl/oboxml_to_owl.xsl OR oboxml_to_owl at GO/Parsers/base_parser.pm line 39.
GO::Parsers::base_parser::throw('GO::Parsers::obo_parser=HASH(0x1a549d0)', 'No such file: GO/xsl/oboxml_to_owl.xsl OR oboxml_to_owl') called at GO/Parsers/base_parser.pm line 341
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x1a549d0)', './t/data/go-with-local-id-mapping.obo') called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t .... Dubious, test returned 2 (wstat 512, 0x200)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t170chadoxml.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t175chadoxml_oborel.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t260oborel_in_chado.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/t270oborel_in_owl.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=112, 53 wallclock secs ( 0.23 usr 0.09 sys + 6.44 cusr 0.62 csys = 7.38 CPU)
Result: FAIL
Failed 4/24 test programs. 0/112 subtests failed.
using perl 5.8.9 on linux 2.6.32-358.6.1.el6.x86_64 #1 SMP Tue Apr 23 19:29:00 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
best regards
Eric