Hi,
there are several pod errors resulting in error messages in man pages.
Here is a patch to fix those.
| Subject: | pod2man-genomemusic.patch |
--- a/lib/Genome/Model/Tools/Music/Bmr/CalcCovgHelper.pm
+++ b/lib/Genome/Model/Tools/Music/Bmr/CalcCovgHelper.pm
@@ -60,7 +60,6 @@
up these base-counts across all ROIs of each gene in the sample, but covered bases that lie
within overlapping ROIs are not counted more than once towards these total counts.
-=back
HELP
}
@@ -110,6 +109,8 @@
=back
+=back
+
EOS
);
}
--- a/lib/Genome/Model/Tools/Music/ClinicalCorrelation.pm
+++ b/lib/Genome/Model/Tools/Music/ClinicalCorrelation.pm
@@ -135,7 +135,7 @@
=item * Columns must be ordered as such:
-=item [ analysis_type clinical_data_trait_name variant/gene_name covariates memo ]
+=item * [ analysis_type clinical_data_trait_name variant/gene_name covariates memo ]
=item * The 'analysis_type' column must contain either "Q", indicating a quantative trait, or "B", indicating a binary trait will be examined.
--- a/lib/Genome/Model/Tools/Music/PathScan.pm
+++ b/lib/Genome/Model/Tools/Music/PathScan.pm
@@ -116,6 +116,7 @@
=back
=back
+
EOS
);
}
--- a/lib/Genome/Model/Tools/Music/Smg.pm
+++ b/lib/Genome/Model/Tools/Music/Smg.pm
@@ -83,6 +83,7 @@
=back
=back
+
EOS
);
}
--- a/lib/Genome/Model/Tools/Music/Bmr/CalcCovg.pm
+++ b/lib/Genome/Model/Tools/Music/Bmr/CalcCovg.pm
@@ -83,6 +83,7 @@
cmd-list-file and cmd-prefix arguments or you will just be re-creating a list of commands.
=back
+
HELP
}