The follow TAP report, results in a smolder report showing 100% ok...
possibly because of the comment line? still ... there were 14 tests
planned... not sure how it says "100%" and looking like 1 test....
1..14
ok 1 - Running singly
ok 2 - chdir ok
ok 3 - symlink ok
not ok 4 - run-analysis mRNAv7 sacCer SE
# waiting for processes to finish.....
not ok 5 - run-analysis.tmp/scer.fastx invalid
not ok 6 - run-analysis.tmp/scer.adapters invalid
not ok 7 - run-analysis.tmp/scer.clipped.fastx invalid
not ok 8 - run-analysis.tmp/scer.clipped.gc.out invalid
not ok 9 - run-analysis.tmp/scer.dspec invalid
not ok 10 - run-analysis.tmp/scer.dercc invalid
not ok 11 - run-analysis.tmp/scer.phred invalid
not ok 12 - run-analysis.tmp/scer.transcript.stats invalid
not ok 13 - run-analysis.tmp/scer.rsem.genes.exprsum invalid
not ok 14 - run-analysis.tmp/scer.merged.bam.stats invalid