Subject: | Test failed for Bio::DB::Sam |
Hi,
I'm trying to install Bio-SamTools-1.36 on a Mac Server OS X 10.6.8. I
am able to successfully compile Bio-SamTools on cpan command line with
'make Bio::DB::Sam' but when I try testing with 'test Bio::DB::Sam' I
get the following error:
...SNIP
Running Build test
make: Nothing to be done for `all'.
Use of uninitialized value $Test::Harness::Switches in length at
/Users/pgc92/.cpan/build/Module-Build-0.3800-ypa0zj/blib/lib/Module/Build/Base.pm
line 2760.
t/01sam.t .. Can't load
'/Users/pgc92/.cpan/build/Bio-SamTools-1.36-JyYhZl/t/../blib/arch/auto/Bio/DB/Sam/Sam.bundle'
for module Bio::DB::Sam:
dlopen(/Users/pgc92/.cpan/build/Bio-SamTools-1.36-JyYhZl/t/../blib/arch/auto/Bio/DB/Sam/Sam.bundle,
2): Symbol not found: _bam_nt16_rev_table
Referenced from:
/Users/pgc92/.cpan/build/Bio-SamTools-1.36-JyYhZl/t/../blib/arch/auto/Bio/DB/Sam/Sam.bundle
Expected in: flat namespace
in
/Users/pgc92/.cpan/build/Bio-SamTools-1.36-JyYhZl/t/../blib/arch/auto/Bio/DB/Sam/Sam.bundle
at /System/Library/Perl/5.10.0/darwin-thread-multi-2level/DynaLoader.pm
line 207.
at t/01sam.t line 26
Compilation failed in require at t/01sam.t line 26.
BEGIN failed--compilation aborted at t/01sam.t line 26.
t/01sam.t .. Dubious, test returned 2 (wstat 512, 0x200)
Failed 112/112 subtests
...SNIP
I think this error is related to
http://bio.perl.org/pipermail/bioperl-l/2011-June/035241.html. Thank you
for your help,
Paul