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The Basics
Id: 78524
Status: resolved
Priority: 0/
Queue: bioperl
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Owner: Nobody in particular
Requestors: dmacks [...] netspace.org
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History Show all quoted text
  Mon Jul 23 03:13:53 2012 dmacks [...] netspace.org - Ticket created
Subject: Fwd: t/PodSyntax.t failure: missing
Date: Mon, 23 Jul 2012 03:13:44 -0400
To: bug-bioperl [...] rt.cpan.org
From: "Daniel Macks" <dmacks [...] netspace.org>
Building BioPerl-1.6.901 on OS X 10.6 (32-bit mode) using system-supplied perl (5.10.0) proceeded without any warnings. But then self-test fails: t/PodSyntax.t ................................ 466/1011 #   Failed test 'POD test for Bio/Tools/Geneid.pm' #   at /sw/lib/perl5/Test/Pod.pm line 182 # Bio/Tools/Geneid.pm (37): Non-ASCII character seen before =encoding in 'Guigó'. Assuming ISO8859-1 #   Failed test 'POD test for Bio/Tools/GuessSeqFormat.pm' #   at /sw/lib/perl5/Test/Pod.pm line 182. # Bio/Tools/GuessSeqFormat.pm (233): Non-ASCII character seen before =encoding in 'Kähäri,'. Assuming ISO8859-1 #   Failed test 'POD test for Bio/Tree/Statistics.pm' #   at /sw/lib/perl5/Test/Pod.pm line 182.Wide character in print at /sw/lib/perl5/5.10.0/Test/Builder.pm line 1759. # Bio/Tree/Statistics.pm (214): Non-ASCII character seen before =encoding in 'deï¬ning'. Assuming UTF-8 t/PodSyntax.t ................................ 590/1011 #   Failed test 'POD test for examples/biblio/biblio-eutils-example.pl' #   at /sw/lib/perl5/Test/Pod.pm line 182. # examples/biblio/biblio-eutils-example.pl (108): Non-ASCII character seen before =encoding in 'Kubícková'. Assuming ISO8859-1 t/PodSyntax.t ................................ 865/1011 #   Failed test 'POD test for Bio/Tools/Run/WrapperBase.pm' #   at /sw/lib/perl5/Test/Pod.pm line 182. # Bio/Tools/Run/WrapperBase.pm (181): Non-ASCII character seen before =encoding in 'NB:ÊThis'. Assuming ISO8859-1 t/PodSyntax.t ................................ 992/1011 # Looks like you failed 5 tests of 1011. t/PodSyntax.t ................................ Dubious, test returned 5 (wstat 1280, 0x500)Failed 5/1011 subtests I have Test::Pod 1.45 installed via fink (along with a ton of other perlmodules, not sure which others might be relevant here). dan -- Daniel Macks dmacks@netspace.org
  Thu Jul 07 14:34:37 2016 cjfields [...] uiuc.edu - Correspondence added
This appears to be fixed in the latest release candidates. Closing this ticket, feel free to resubmit this to the main BioPerl Github issues site: https://github.com/bioperl/bioperl-live/issues Thanks. On Mon Jul 23 02:13:53 2012, dmacks@netspace.org wrote: Show quoted text
> > Building BioPerl-1.6.901 on OS X 10.6 (32-bit mode) using system- > supplied perl (5.10.0) proceeded without any warnings. But then > self-test fails: > > t/PodSyntax.t ................................ 466/1011 > #   Failed test 'POD test for Bio/Tools/Geneid.pm' > #   at /sw/lib/perl5/Test/Pod.pm line 182 > # Bio/Tools/Geneid.pm (37): Non-ASCII character seen before =encoding > in 'Guigó'. Assuming ISO8859-1 > > #   Failed test 'POD test for Bio/Tools/GuessSeqFormat.pm' > #   at /sw/lib/perl5/Test/Pod.pm line 182. > # Bio/Tools/GuessSeqFormat.pm (233): Non-ASCII character seen before > =encoding in 'Kähäri,'. Assuming ISO8859-1 > > #   Failed test 'POD test for Bio/Tree/Statistics.pm' > #   at /sw/lib/perl5/Test/Pod.pm line 182.Wide character in print at > /sw/lib/perl5/5.10.0/Test/Builder.pm line 1759. > # Bio/Tree/Statistics.pm (214): Non-ASCII character seen before > =encoding in 'deï¬ning'. Assuming UTF-8 > t/PodSyntax.t ................................ 590/1011 > #   Failed test 'POD test for examples/biblio/biblio-eutils- > example.pl' > #   at /sw/lib/perl5/Test/Pod.pm line 182. > # examples/biblio/biblio-eutils-example.pl (108): Non-ASCII character > seen before =encoding in 'Kubícková'. Assuming ISO8859-1 > t/PodSyntax.t ................................ 865/1011 > #   Failed test 'POD test for Bio/Tools/Run/WrapperBase.pm' > #   at /sw/lib/perl5/Test/Pod.pm line 182. > # Bio/Tools/Run/WrapperBase.pm (181): Non-ASCII character seen before > =encoding in 'NB:ÊThis'. Assuming ISO8859-1 > t/PodSyntax.t ................................ 992/1011 > # Looks like you failed 5 tests of 1011. > t/PodSyntax.t ................................ Dubious, test returned > 5 (wstat 1280, 0x500)Failed 5/1011 subtests > > I have Test::Pod 1.45 installed via fink (along with a ton of other > perlmodules, not sure which others might be relevant here). > > dan > > -- > Daniel Macks > dmacks@netspace.org
  Thu Jul 07 14:34:39 2016 The RT System itself - Status changed from 'new' to 'open'
  Thu Jul 07 14:34:39 2016 cjfields [...] uiuc.edu - Status changed from 'open' to 'resolved'