Bug #77885 for UMLS-Interface: bug using UMLS-Interface/Similarity

Mon Jun 18 17:43:32 2012 nataliya [...] cs.toronto.edu - Ticket created

Subject:	bug using UMLS-Interface/Similarity
Date:	Mon, 18 Jun 2012 17:43:22 -0400
To:	bug-UMLS-Interface [...] rt.cpan.org
From:	"Nataliya Prokoshyna" <nataliya [...] cs.toronto.edu>

To whom it may concern: I'd like to report a bug: I'm running on Windows 7 through command line. The screenshot of the error is attached. When I invoke umls-similarity using both "PAR, CHD" relationships (in config.txt), the call works and returns "14" as the original cdist. When I invoke umls-similarity using only "PAR" relationship the call fails with the error in the screenshot. I'm able to replicate it every time. Whether or not I create the index or run --realtime does not impact it. If you ever fix this or find the root cause, I hope you could get back to me. (Please don't use my e-mail on the website however, I don't want spam.) Thanks, Nataliya.

Download umlssimilarity_error.png
image/png 38.7k

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Tue Jun 19 07:40:38 2012 TPEDERSE [...] cpan.org - Correspondence added

Hi Nataliya, Thanks for this report! For the similarity measures you must use PAR together with CHD (PAR/CHD) and also RB with RN. In general these relations are bidirectional, and so even if we allowed PAR by itself I think the results would be the same. We will add some error checking for the case you found, and issue a more descriptive error message. I hope this helps. Please let us know if other questions arise. Cordially, Ted On Mon Jun 18 17:43:32 2012, nataliya@cs.toronto.edu wrote: Show quoted text

> To whom it may concern: > > I'd like to report a bug: > > I'm running on Windows 7 through command line. The screenshot of the

error Show quoted text

> is attached. > > When I invoke umls-similarity using both "PAR, CHD" relationships (in > config.txt), the call works and returns "14" as the original cdist.

When I Show quoted text

> invoke umls-similarity using only "PAR" relationship the call fails

with Show quoted text

> the error in the screenshot. I'm able to replicate it every time.

Whether Show quoted text

> or not I create the index or run --realtime does not impact it. > > If you ever fix this or find the root cause, I hope you could get back

to Show quoted text

> me. (Please don't use my e-mail on the website however, I don't want > spam.) > > Thanks, > Nataliya.

Tue Jun 19 07:40:39 2012 The RT System itself - Status changed from 'new' to 'open'

Tue Jun 19 07:41:40 2012 TPEDERSE [...] cpan.org - Ticket deleted

Tue Jun 19 07:41:41 2012 TPEDERSE [...] cpan.org - Status changed from 'deleted' to 'open'

Tue Jun 19 07:43:21 2012 TPEDERSE [...] cpan.org - Correspondence added 20 min

Error message will be added to handle this case. Must use PAR/CHD and RB/RN together in similarity measures.

Tue Jun 19 07:43:22 2012 TPEDERSE [...] cpan.org - Status changed from 'open' to 'resolved'

Tue Jun 19 07:43:22 2012 TPEDERSE [...] cpan.org - Given to TPEDERSE