| Subject: | Report a bug, I tried to install GBrowse-1.997, but couldn't |
| Date: | Fri, 31 Jul 2009 21:58:52 +0900 |
| To: | bug-GBrowse [...] rt.cpan.org |
| From: | Sayumi TAKESHITA <takess [...] mi.mss.co.jp> |
First, I'm sorry for my poor English.
Anyway, I tried to find Bio/Graphics/Browser/UserTracks.pm
but I couldn't find UserTracks.pm in CPAN site and under
this folder(/root/.cpan/build/GBrowse-1.997-nQSP_c/lib/Bio/Graphics/Browser/) .
Is it bug?
================*INFORMATION*=====================
- Distribution name and version:GBrowse-1.997
- Perl version:
# perl -v
This is perl, v5.8.8 built for x86_64-linux-thread-multi
- Operating System vendor and version:
# uname -a
Linux (skip).ac.jp 2.6.18-128.el5 #1 SMP Wed Jan 21 10:41:14 EST 2009 x86_64 x86_64 x86_64 GNU/Linux
==================================================
---------------*Installation log and message*----------------
#perl -MCPAN -e 'install Bio::Graphics::Browser'
(skip)
Running Build test
NOTE: Run ./Build reconfig to change existing configuration.
/etc/httpd/conf.d/gbrowse2.conf is already installed. Please run ./Build apache_conf to see this file's recommended contents.
t/01yeast.t ............... ok
t/02.rearchitecture.t ..... ok
t/03.render.t ............. Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /root/.cpan/build/GBrowse-1.997-nQSP_c/t/testdata /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch
/root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
/usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi
/usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl
/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
Compilation failed in require at (eval 62) line 3, <DATA> line 192.
...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192.
Compilation failed in require at t/03.render.t line 48, <DATA> line 192.
BEGIN failed--compilation aborted at t/03.render.t line 48, <DATA> line 192.
t/03.render.t ............. Dubious, test returned 2 (wstat 512, 0x200)
Failed 148/148 subtests
t/04.remoteserver.t ....... Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch /root/.cpan/build/GBrowse-1.997-nQSP_c/install_util
/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7
/usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
/usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at
/root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
Compilation failed in require at (eval 62) line 3, <DATA> line 192.
...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192.
Compilation failed in require at t/04.remoteserver.t line 45, <DATA> line 192.
BEGIN failed--compilation aborted at t/04.remoteserver.t line 45, <DATA> line 192.
t/04.remoteserver.t ....... Dubious, test returned 2 (wstat 512, 0x200)
Failed 43/43 subtests
t/05.deferredrendering.t .. Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /home/lstein/projects/bioperl-live /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch
/root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
/usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi
/usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl
/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
Compilation failed in require at (eval 62) line 3, <DATA> line 192.
...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192.
Compilation failed in require at t/05.deferredrendering.t line 44, <DATA> line 192.
BEGIN failed--compilation aborted at t/05.deferredrendering.t line 44, <DATA> line 192.
t/05.deferredrendering.t .. Dubious, test returned 2 (wstat 512, 0x200)
Failed 19/19 subtests
t/06.featuresearch.t ...... Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /home/lstein/projects/bioperl-live /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch
/root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
/usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi
/usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl
/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192.
Compilation failed in require at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/RenderPanels.pm line 9, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/RenderPanels.pm line 9, <DATA> line 192.
Compilation failed in require at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/Slave.pm line 16, <DATA> line 192.
BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/Slave.pm line 16, <DATA> line 192.
Compilation failed in require at t/06.featuresearch.t line 42, <DATA> line 192.
BEGIN failed--compilation aborted at t/06.featuresearch.t line 42, <DATA> line 192.
t/06.featuresearch.t ...... Dubious, test returned 2 (wstat 512, 0x200)
Failed 25/25 subtests
t/07.karyotype.t .......... ok
t/08.calign.t ............. ok
Test Summary Report
-------------------
t/03.render.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 148 tests but ran 0.
t/04.remoteserver.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 43 tests but ran 0.
t/05.deferredrendering.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 19 tests but ran 0.
t/06.featuresearch.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 25 tests but ran 0.
Files=8, Tests=106, 4 wallclock secs ( 0.05 usr 0.04 sys + 2.56 cusr 0.39 csys = 3.04 CPU)
Result: FAIL
Failed 4/8 test programs. 0/106 subtests failed.
LDS/GBrowse-1.997.tar.gz
./Build test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports LDS/GBrowse-1.997.tar.gz
Running Build install
make test had returned bad status, won't install without force
#
-----------------------------------------------------------------
--
Sayumi Takeshita