| Subject: | Bio::SearchIO::Writer::Gbrowse e-value vs. score |
Small typo preventing the e-value from being used in the GFF score
field. See attached patch.
| Subject: | Bio-SearchIO-Writer-GbrowseGFF.pm.patch |
--- ./GbrowseGFF.pm.orig 2009-04-03 09:53:23.000000000 -0400
+++ ./GbrowseGFF.pm 2009-04-03 09:51:42.000000000 -0400
@@ -94,7 +94,7 @@ sub new {
($self->{'_evalue'},
$self->{'_cigar'},
$self->{'_prefix'},
- $self->{'signif'} ) = $self->_rearrange([qw(E_VALUE OUTPUT_CIGAR PREFIX
+ $self->{'_signif'} ) = $self->_rearrange([qw(E_VALUE OUTPUT_CIGAR PREFIX
OUTPUT_SIGNIF)], @args);
$self->{'_evalue'} && warn( "Use of the -e_value argument is deprecated.\nIn future, use \$writer->filter(\"type\", \&code) instead.\n\tparsing will proceed correctly with this e_value\n");
$self->{Gbrowse_HSPID} = 0;