Bug #32939 for InSilicoSpectro: Missing dependencies

Tue Feb 05 05:32:11 2008 michaelgang [...] gmail.com - Ticket created

Subject:

Missing dependencies

When running the following code: use POSIX; use Readonly; use InSilicoSpectro; use InSilicoSpectro::InSilico::AASequence; use InSilicoSpectro::InSilico::IsoelPoint; use InSilicoSpectro::InSilico::ExpCalibrator; my $pi=InSilicoSpectro::InSilico::IsoelPoint->new; I've got the error message that I don't have the modules Statistics::Regression Math::Spline But when I installed the module InSilicoSpectro i was not referred from cpan install to these modules. I use perl version 5.8.7 on a linux machine. Thanks in advance, Michael BTW: The other bug reported is still open. I would suggest that in InSilicoSpectro.pm instead of the lines require Phenyx::Config::GlobalParam; Phenyx::Config::GlobalParam::readParam(undef, 1); my $tmp; eval " use Phenyx::Manage::User; \$tmp=Phenyx::Manage::User->new(name=>'default')->getFile('insilicodef.xml'); " or confess "error during eval statmeent: $!"; push @tmp, $tmp; you should refer to the files at InSilicoSpectro/config/*xml

Fri Feb 08 02:53:58 2008 alex [...] framexpeditions.com - Correspondence added

From:

alexandre.masselot [...] genebio.com

Hello Michael, thanks for your email. That module are "recommended" not required because only a few feature of InSilicoSpectro needs them. So we must find a balance between installing too much and too litlle modules... there is often no problem about that in linux, but that becomes less evident for our poor collegues stucked with windows machines... Is it a problem for you to install those modules afterwrds? cheers Alex On Tue Feb 05 05:32:11 2008, michaelg wrote: Show quoted text

> When running the following code: > use POSIX; > use Readonly; > use InSilicoSpectro; > use InSilicoSpectro::InSilico::AASequence; > use InSilicoSpectro::InSilico::IsoelPoint; > use InSilicoSpectro::InSilico::ExpCalibrator; > my $pi=InSilicoSpectro::InSilico::IsoelPoint->new; > > I've got the error message that I don't have the modules > Statistics::Regression > Math::Spline > > But when I installed the module InSilicoSpectro i was not referred > from > cpan install to these modules. > > I use perl version 5.8.7 on a linux machine. > > Thanks in advance, > Michael > > BTW: The other bug reported is still open. I would suggest that in > InSilicoSpectro.pm instead of the lines > > require Phenyx::Config::GlobalParam; > Phenyx::Config::GlobalParam::readParam(undef, 1); > my $tmp; > eval " > use Phenyx::Manage::User; > > \$tmp=Phenyx::Manage::User->new(name=>'default')-

> >getFile('insilicodef.xml');

> " or confess "error during eval statmeent: $!"; > push @tmp, $tmp; > > you should refer to the files at InSilicoSpectro/config/*xml > >

Fri Feb 08 02:54:00 2008 The RT System itself - Status changed from 'new' to 'open'

Sun Feb 10 02:49:44 2008 michaelgang [...] gmail.com - Correspondence added

Subject:	Re: [rt.cpan.org #32939] Missing dependencies
Date:	Sun, 10 Feb 2008 09:49:29 +0200
To:	bug-InSilicoSpectro [...] rt.cpan.org
From:	"Michael Gang" <michaelgang [...] gmail.com>

Hi Alex, Thank's for your reply. I installed them and it worked Best regards, Michael On Feb 8, 2008 9:54 AM, Alexandre Masselot via RT < bug-InSilicoSpectro@rt.cpan.org> wrote: Show quoted text

> > <URL: http://rt.cpan.org/Ticket/Display.html?id=32939 > > > Hello Michael, > > thanks for your email. > > That module are "recommended" not required because only a few feature of > InSilicoSpectro needs them. > > So we must find a balance between installing too much and too litlle > modules... > there is often no problem about that in linux, but that becomes less > evident for our poor collegues stucked with windows machines... > > Is it a problem for you to install those modules afterwrds? > cheers > Alex > > On Tue Feb 05 05:32:11 2008, michaelg wrote:

> > When running the following code: > > use POSIX; > > use Readonly; > > use InSilicoSpectro; > > use InSilicoSpectro::InSilico::AASequence; > > use InSilicoSpectro::InSilico::IsoelPoint; > > use InSilicoSpectro::InSilico::ExpCalibrator; > > my $pi=InSilicoSpectro::InSilico::IsoelPoint->new; > > > > I've got the error message that I don't have the modules > > Statistics::Regression > > Math::Spline > > > > But when I installed the module InSilicoSpectro i was not referred > > from > > cpan install to these modules. > > > > I use perl version 5.8.7 on a linux machine. > > > > Thanks in advance, > > Michael > > > > BTW: The other bug reported is still open. I would suggest that in > > InSilicoSpectro.pm instead of the lines > > > > require Phenyx::Config::GlobalParam; > > Phenyx::Config::GlobalParam::readParam(undef, 1); > > my $tmp; > > eval " > > use Phenyx::Manage::User; > > > > \$tmp=Phenyx::Manage::User->new(name=>'default')-

> > >getFile('insilicodef.xml');

> > " or confess "error during eval statmeent: $!"; > > push @tmp, $tmp; > > > > you should refer to the files at InSilicoSpectro/config/*xml > > > >

> > > >