Bug #31796 for bioperl: SeqIO

Fri Dec 21 07:07:30 2007 brandi.cantarel [...] afmb.univ-mrs.fr - Ticket created

Subject:	SeqIO
Date:	Fri, 21 Dec 2007 13:06:39 +0100
To:	bug-bioperl [...] rt.cpan.org
From:	Brandi Cantarel <brandi.cantarel [...] afmb.univ-mrs.fr>

I might have found a bug in SeqIO in bioperl. Well it is actually a memory leak. When I try to load large file, I can step through the first 10K or so sequences (using next_seq) but then it just hangs..... If this bug is fixed please let me know. Brandi Cantarel -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.

Fri Dec 21 08:57:16 2007 sb10 [...] sanger.ac.uk - Correspondence added

From:

bix [...] sendu.me.uk

On Fri Dec 21 07:07:30 2007, brandi.cantarel@afmb.univ-mrs.fr wrote: Show quoted text

> I might have found a bug in SeqIO in bioperl. Well it is actually a > memory leak. When I try to load large file, I can step through the > first 10K or so sequences (using next_seq) but then it just hangs..... > > If this bug is fixed please let me know.

Please use http://bugzilla.bioperl.org/ to tell us about this bug. After creating a bug report you'll be able to attach the script in which you encounter the problem, which we need to diagnose this issue.

Fri Dec 21 08:57:19 2007 The RT System itself - Status changed from 'new' to 'open'

Tue May 27 11:16:34 2008 sb10 [...] sanger.ac.uk - Correspondence added

Need more information, was it ever submitted to bugzilla?

Tue May 27 11:17:07 2008 sb10 [...] sanger.ac.uk - Status changed from 'open' to 'stalled'

Thu Apr 16 18:09:20 2009 cjfields [...] uiuc.edu - Correspondence added

No response.

Thu Apr 16 18:09:21 2009 The RT System itself - Status changed from 'stalled' to 'open'

Thu Apr 16 18:09:22 2009 cjfields [...] uiuc.edu - Status changed from 'open' to 'rejected'