| Subject: | Failed test 'Agrep SYNOPSIS compiles' |
looking forward to a clean install
editted cpan install log follows:
CPAN.pm: Going to build L/LI/LIMAONE/Bio-Grep-v0.8.3.tar.gz
Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Grep
...
PERL_DL_NONLAZY=1 /l/site/inst/Linux-i686/sys/bin/perl
"-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib',
'blib/arch')" t/*.t
t/00.checkprereq......ok 1/1#
#
*****************************************************************************
# * Bioperl : FOUND
*
# * Bioperl-run: FOUND
*
# * EMBOSS : FOUND
*
#
...
t/30.Utils............ok
t/40.synopsis.........ok 1/8
# Failed test 'Agrep SYNOPSIS compiles'
# at t/40.synopsis.t line 238.
t/40.synopsis.........NOK 5/8#
# ------------- EXCEPTION: Bio::Root::IOException -------------
# MSG: Can't copy t/TestRevCom.fasta to t/data/TestRevCom.fasta
# VALUE: No such file or directory
# STACK: Error::throw
# STACK: Bio::Root::Root::throw
/n/site/inst/shared/sys/lib/perl5/site_perl/5.8.8/Bio/Root/Root.pm:359
# STACK: Bio::Grep::Backend::BackendI::_copy_fasta_file_and_create_nfo
/root/.cpan/build/Bio-Grep-v0.8.3-n5wwzy/blib/lib/Bio/Grep/Backend/BackendI.pm:367
# STACK: main::code_eval
/root/.cpan/build/Bio-Grep-v0.8.3-n5wwzy/blib/lib/Bio/Grep/Backend/Agrep.pm:104
# STACK: t/40.synopsis.t:238
# -------------------------------------------------------------
t/40.synopsis.........ok 6/8
# Failed test 'RE SYNOPSIS compiles'
t/40.synopsis.........NOK 7/8# at t/40.synopsis.t line 346.
#
# ------------- EXCEPTION: Bio::Root::IOException -------------
# MSG: Can't copy t/TestRevCom.fasta to t/data/TestRevCom.fasta
# VALUE: No such file or directory
# STACK: Error::throw
# STACK: Bio::Root::Root::throw
/n/site/inst/shared/sys/lib/perl5/site_perl/5.8.8/Bio/Root/Root.pm:359
# STACK: Bio::Grep::Backend::BackendI::_copy_fasta_file_and_create_nfo
/root/.cpan/build/Bio-Grep-v0.8.3-n5wwzy/blib/lib/Bio/Grep/Backend/BackendI.pm:367
# STACK: main::code_eval
/root/.cpan/build/Bio-Grep-v0.8.3-n5wwzy/blib/lib/Bio/Grep/Backend/Agrep.pm:104
# STACK: t/40.synopsis.t:346
# -------------------------------------------------------------
# Failed test 'Cookbook recipe motifs solution b compiles'
t/40.synopsis.........NOK 8/8# at t/40.synopsis.t line 363.
# Can't opendir(GLOB(0xaa37760), t/data): No such file or directory at
(eval 67) line 7
One or more DATA sections were not processed by Inline.
# Looks like you planned 8 tests but ran 1 extra.
# Looks like you failed 3 tests of 9 run.
t/40.synopsis.........dubious
Test returned status 3 (wstat 768, 0x300)
DIED. FAILED tests 5, 7-9
Failed 4/8 tests, 50.00% okay (less 5 skipped tests: -1 okay,
-12.50%)
t/perlcritic..........skipped
all skipped: Test::Perl::Critic required for PBP tests
t/pod-coverage........ok 12/12One or more DATA sections were not
processed by Inline.
t/pod-coverage........ok
t/pod.................ok
Failed Test Stat Wstat Total Fail List of Failed
-------------------------------------------------------------------------------
t/40.synopsis.t 3 768 8 4 5 7-9
2 tests and 315 subtests skipped.
Failed 1/11 test scripts. 2/540 subtests failed.
Files=11, Tests=540, 128 wallclock secs (47.06 cusr + 55.07 csys =
102.13 CPU)
Failed 1/11 test programs. 2/540 subtests failed.
make: *** [test_dynamic] Error 255
LIMAONE/Bio-Grep-v0.8.3.tar.gz
/usr/bin/make test -- NOT OK
Running make install
make test had returned bad status, won't install without force
Failed during this command:
LIMAONE/Bio-Grep-v0.8.3.tar.gz : make_test NO