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This queue is for tickets about the Bio-Phylo CPAN distribution.

Report information
The Basics
Id: 24526
Status: resolved
Priority: 0/
Queue: Bio-Phylo

People
Owner: Nobody in particular
Requestors: itbjjo [...] itb.uni-stuttgart.de
Cc:
AdminCc:

Bug Information
Severity: (no value)
Broken in: (no value)
Fixed in: (no value)



Subject: Bug report
Date: Tue, 23 Jan 2007 14:13:45 +0100
To: bug-Bio-Phylo [...] rt.cpan.org
From: Jens Joachim <itbjjo [...] itb.uni-stuttgart.de>
Hallo, I really like the idea of a SVG-treedrawer, but if I try Treedrawer with the example from the SYNOPSIS I get the following error: Can't load image drawer: Can't locate Bio/Phylo/Treedrawer/SVG.pm in @INC ( @INC contains: /usr/lib/perl5/5.8.5/i386-linux-thread-multi /usr/lib/perl5/5.8.5 /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.2/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.1/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2 /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.2/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.1/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2 /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl . ) at ( eval 20 ) line 3. If I create a SVG.pm file and change there all appearances of 'Svg' to 'SVG' it works but it doesn't get the options in SVG.pm (line 229) my $width = $options->{'-width'}; Error message: Use of uninitialized value in pattern match (m//) at /usr/lib/perl5/site_perl/5.8.5/Bio/Phylo/Treedrawer/SVG.pm line 230. I used the following environment: Bio-Phylo-0.15 Perl: v5.8.5 OS: Linux Best regards, Jens Joachim
Dear Jens, thank you for using the bug-tracking system, I appreciate your input (sorry about the belated reply). The case-sensitivity bug is a "known issue", I'm working on it. Best wishes, Rutger On Tue Jan 23 08:15:25 2007, itbjjo@itb.uni-stuttgart.de wrote: Show quoted text
> Hallo, > > I really like the idea of a SVG-treedrawer, but if I try Treedrawer with > the example from the SYNOPSIS I get the following error: > > Can't load image drawer: Can't locate Bio/Phylo/Treedrawer/SVG.pm in > @INC ( @INC contains: /usr/lib/perl5/5.8.5/i386-linux-thread-multi > /usr/lib/perl5/5.8.5 > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.2/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.1/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 > /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2 > /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0 > /usr/lib/perl5/site_perl > /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.2/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.1/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 > /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2 > /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0 > /usr/lib/perl5/vendor_perl . ) at ( eval 20 ) line 3. > > If I create a SVG.pm file and change there all appearances of 'Svg' to > 'SVG' it works but it doesn't get the options in SVG.pm (line 229) > my $width = $options->{'-width'}; > > Error message: > > Use of uninitialized value in pattern match (m//) at > /usr/lib/perl5/site_perl/5.8.5/Bio/Phylo/Treedrawer/SVG.pm line 230. > > > I used the following environment: > > Bio-Phylo-0.15 > Perl: v5.8.5 > OS: Linux > > > Best regards, > Jens Joachim
Hi, I've fixed the case-sensitivity bug, a new, corrected, version (v.0.16 release candidate) of Bio::Phylo will appear on CPAN this week. I now consider this issue resolved. Best wishes, Rutger