Skip Menu |

This queue is for tickets about the Bundle-BioPerl CPAN distribution.

Report information
The Basics
Id: 23416
Status: resolved
Priority: 0/
Queue: Bundle-BioPerl

People
Owner: Nobody in particular
Requestors: victor.de.jager [...] nbic.nl
Cc:
AdminCc:

Bug Information
Severity: (no value)
Broken in: (no value)
Fixed in: (no value)



Subject: Bunde::BioPerl bug report
Date: Fri, 17 Nov 2006 09:54:16 +0100
To: bug-Bundle-BioPerl [...] rt.cpan.org, dag [...] sonsorol.org
From: Victor de Jager <victor.de.jager [...] nbic.nl>
Hi Christian, I am trying to install BioPerl on one of our research machines using CPAN, but it breaks on a spelling error. Bundle summary: The following items in bundle Bundle::BioPerl had installation problems: Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel This should be Spreadsheet::ParseExcel of course. Data::Stag::writer does not exist in CPAN, should be Data::Stag::Writer Hope it helps, meanwhile I got around using the CVS version. Best regards Victor de Jager 1) Bioinformatics Support (NBIC) 2) CMBI Bacterial Genomics Phone: +31 (0)24 36 19504 E-mail: victor.de.jager@nbic.nl Netherlands Bioinformatics Centre 260 NBIC P.O. Box 9101 6500 HB Nijmegen Fax: +31 (0)24 36 19395 Visiting address: Geert Grooteplein 28, Route 260 6525 GA Nijmegen *Here's the complete output of my try: perl -MCPAN -e 'install Bundle::BioPerl' CPAN: Storable loaded ok Going to read /root/.cpan/Metadata Database was generated on Fri, 17 Nov 2006 06:24:14 GMT Ace is up to date. Bio::ASN1::EntrezGene is up to date. Class::AutoClass is up to date. Clone is up to date. Convert::Binary::C is up to date. Running install for module Data::Stag::writer The module Data::Stag::writer isn't available on CPAN. Either the module has not yet been uploaded to CPAN, or it is temporary unavailable. Please contact the author to find out more about the status. Try 'i Data::Stag::writer'. DBD::mysql is up to date. GD::SVG is up to date. GD is up to date. Graph::Directed is up to date. HTML::Parser is up to date. Running install for module HTTP::Request::Common- The module HTTP::Request::Common- isn't available on CPAN. Either the module has not yet been uploaded to CPAN, or it is temporary unavailable. Please contact the author to find out more about the status. Try 'i HTTP::Request::Common-'. LWP::UserAgent is up to date. Set::Scalar is up to date. SOAP::Lite is up to date. Running install for module Spreadhseet::ParseExcel The module Spreadhseet::ParseExcel isn't available on CPAN. Either the module has not yet been uploaded to CPAN, or it is temporary unavailable. Please contact the author to find out more about the status. Try 'i Spreadhseet::ParseExcel'. Storable is up to date. SVG is up to date. SVG::Graph is up to date. Text::Shellwords is up to date. XML::DOM::XPath is up to date. XML::Parser::PerlSAX is up to date. XML::SAX is up to date. XML::SAX::Base is up to date. XML::SAX::Writer is up to date. XML::Simple is up to date. XML::Twig is up to date. XML::Writer is up to date. Bundle summary: The following items in bundle Bundle::BioPerl had installation problems: Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel *
Subject: Re: [rt.cpan.org #23416] Bunde::BioPerl bug report
Date: Fri, 17 Nov 2006 05:45:18 -0500
To: bug-Bundle-BioPerl [...] rt.cpan.org
From: Chris Dagdigian <dag [...] sonsorol.org>
Much appreciated! Will fix ASAP. Regards, Chris On Nov 17, 2006, at 3:53 AM, victor.de.jager@nbic.nl via RT wrote: Show quoted text
> > Fri Nov 17 03:53:52 2006: Request 23416 was acted upon. > Transaction: Ticket created by victor.de.jager@nbic.nl > Queue: Bundle-BioPerl > Subject: Bunde::BioPerl bug report > Broken in: (no value) > Severity: (no value) > Owner: Nobody > Requestors: victor.de.jager@nbic.nl > Status: new > Ticket <URL: http://rt.cpan.org/Ticket/Display.html?id=23416 > > > > Hi Christian, > > I am trying to install BioPerl on one of our research machines using > CPAN, but it breaks on a spelling error. > > Bundle summary: The following items in bundle Bundle::BioPerl had > installation problems: > Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel > > This should be Spreadsheet::ParseExcel of course. > Data::Stag::writer does not exist in CPAN, should be > Data::Stag::Writer > > Hope it helps, meanwhile I got around using the CVS version. > Best regards > > Victor de Jager > 1) Bioinformatics Support (NBIC) > 2) CMBI Bacterial Genomics > > Phone: +31 (0)24 36 19504 > > E-mail: victor.de.jager@nbic.nl > > Netherlands Bioinformatics Centre > 260 NBIC > P.O. Box 9101 > 6500 HB Nijmegen > Fax: +31 (0)24 36 19395 > > Visiting address: > Geert Grooteplein 28, Route 260 > 6525 GA Nijmegen > > > > *Here's the complete output of my try: > > > > perl -MCPAN -e 'install Bundle::BioPerl' > CPAN: Storable loaded ok > Going to read /root/.cpan/Metadata > Database was generated on Fri, 17 Nov 2006 06:24:14 GMT > Ace is up to date. > Bio::ASN1::EntrezGene is up to date. > Class::AutoClass is up to date. > Clone is up to date. > Convert::Binary::C is up to date. > Running install for module Data::Stag::writer > > The module Data::Stag::writer isn't available on CPAN. > > Either the module has not yet been uploaded to CPAN, or it is > temporary unavailable. Please contact the author to find out > more about the status. Try 'i Data::Stag::writer'. > DBD::mysql is up to date. > GD::SVG is up to date. > GD is up to date. > Graph::Directed is up to date. > HTML::Parser is up to date. > Running install for module HTTP::Request::Common- > > The module HTTP::Request::Common- isn't available on CPAN. > > Either the module has not yet been uploaded to CPAN, or it is > temporary unavailable. Please contact the author to find out > more about the status. Try 'i HTTP::Request::Common-'. > LWP::UserAgent is up to date. > Set::Scalar is up to date. > SOAP::Lite is up to date. > Running install for module Spreadhseet::ParseExcel > > The module Spreadhseet::ParseExcel isn't available on CPAN. > > Either the module has not yet been uploaded to CPAN, or it is > temporary unavailable. Please contact the author to find out > more about the status. Try 'i Spreadhseet::ParseExcel'. > Storable is up to date. > SVG is up to date. > SVG::Graph is up to date. > Text::Shellwords is up to date. > XML::DOM::XPath is up to date. > XML::Parser::PerlSAX is up to date. > XML::SAX is up to date. > XML::SAX::Base is up to date. > XML::SAX::Writer is up to date. > XML::Simple is up to date. > XML::Twig is up to date. > XML::Writer is up to date. > Bundle summary: The following items in bundle Bundle::BioPerl had > installation problems: > Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel > * >
On Fri Nov 17 05:46:58 2006, dag@sonsorol.org wrote: Show quoted text
> > Much appreciated! Will fix ASAP. > > Regards, > Chris > > > On Nov 17, 2006, at 3:53 AM, victor.de.jager@nbic.nl via RT wrote: >
> > > > Fri Nov 17 03:53:52 2006: Request 23416 was acted upon. > > Transaction: Ticket created by victor.de.jager@nbic.nl > > Queue: Bundle-BioPerl > > Subject: Bunde::BioPerl bug report > > Broken in: (no value) > > Severity: (no value) > > Owner: Nobody > > Requestors: victor.de.jager@nbic.nl > > Status: new > > Ticket <URL: http://rt.cpan.org/Ticket/Display.html?id=23416 > > > > > > > Hi Christian, > > > > I am trying to install BioPerl on one of our research machines using > > CPAN, but it breaks on a spelling error. > > > > Bundle summary: The following items in bundle Bundle::BioPerl had > > installation problems: > > Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel > > > > This should be Spreadsheet::ParseExcel of course. > > Data::Stag::writer does not exist in CPAN, should be > > Data::Stag::Writer > > > > Hope it helps, meanwhile I got around using the CVS version. > > Best regards > > > > Victor de Jager > > 1) Bioinformatics Support (NBIC) > > 2) CMBI Bacterial Genomics > > > > Phone: +31 (0)24 36 19504 > > > > E-mail: victor.de.jager@nbic.nl > > > > Netherlands Bioinformatics Centre > > 260 NBIC > > P.O. Box 9101 > > 6500 HB Nijmegen > > Fax: +31 (0)24 36 19395 > > > > Visiting address: > > Geert Grooteplein 28, Route 260 > > 6525 GA Nijmegen > > > > > > > > *Here's the complete output of my try: > > > > > > > > perl -MCPAN -e 'install Bundle::BioPerl' > > CPAN: Storable loaded ok > > Going to read /root/.cpan/Metadata > > Database was generated on Fri, 17 Nov 2006 06:24:14 GMT > > Ace is up to date. > > Bio::ASN1::EntrezGene is up to date. > > Class::AutoClass is up to date. > > Clone is up to date. > > Convert::Binary::C is up to date. > > Running install for module Data::Stag::writer > > > > The module Data::Stag::writer isn't available on CPAN. > > > > Either the module has not yet been uploaded to CPAN, or it is > > temporary unavailable. Please contact the author to find out > > more about the status. Try 'i Data::Stag::writer'. > > DBD::mysql is up to date. > > GD::SVG is up to date. > > GD is up to date. > > Graph::Directed is up to date. > > HTML::Parser is up to date. > > Running install for module HTTP::Request::Common- > > > > The module HTTP::Request::Common- isn't available on CPAN. > > > > Either the module has not yet been uploaded to CPAN, or it is > > temporary unavailable. Please contact the author to find out > > more about the status. Try 'i HTTP::Request::Common-'. > > LWP::UserAgent is up to date. > > Set::Scalar is up to date. > > SOAP::Lite is up to date. > > Running install for module Spreadhseet::ParseExcel > > > > The module Spreadhseet::ParseExcel isn't available on CPAN. > > > > Either the module has not yet been uploaded to CPAN, or it is > > temporary unavailable. Please contact the author to find out > > more about the status. Try 'i Spreadhseet::ParseExcel'. > > Storable is up to date. > > SVG is up to date. > > SVG::Graph is up to date. > > Text::Shellwords is up to date. > > XML::DOM::XPath is up to date. > > XML::Parser::PerlSAX is up to date. > > XML::SAX is up to date. > > XML::SAX::Base is up to date. > > XML::SAX::Writer is up to date. > > XML::Simple is up to date. > > XML::Twig is up to date. > > XML::Writer is up to date. > > Bundle summary: The following items in bundle Bundle::BioPerl had > > installation problems: > > Data::Stag::writer HTTP::Request::Common- Spreadhseet::ParseExcel > > * > >
>
This appears to have been resolved but not closed. Thanks for pointing this out initially!