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This queue is for tickets about the Bio-Phylo CPAN distribution.

Report information
The Basics
Id: 14101
Status: resolved
Priority: 0/
Queue: Bio-Phylo
People
Owner: Nobody in particular
Requestors: stiffler [...] cs.uoregon.edu
Cc:
AdminCc:
Bug Information
Severity: Wishlist
Broken in: 0.03
Fixed in: (no value)

History Show all quoted text
  Wed Aug 10 15:28:04 2005 Guest - Ticket created
Subject: Bugs/Requests
Version: Bio-Phylo-0.03 Perl: v5.8.6 built for x86_64-linux-thread-multi OS: 2.6.12-1.1390_FC4smp #1 SMP Tue Jul 5 20:09:48 EDT 2005 x86_64 GNU/Linux Issues: - Left side of cladogram is being cutoff. I can zoom out and get the full image, but the entire tree should be rendered in the default view. - Negative branch lengths are not getting parsed. This causes problems in phylograms, but the branch length also appears in leaf label. - Phylogram is displaying a wierd line shaped as a sideways "L" labeled "mya" and with a 0 on the bottom. - It would be nice to remove the node labels (n1, n2...) If you need my tree files or screenshots of the images produced, let me know.
  Sat Aug 20 13:29:10 2005 Guest - Correspondence added
I have uploaded version 0.04. This fixes the negative branch length parsing (in addition to some other small things, consult the CHANGES file). The SVG unparser now sets all negative branch lengths to zero. These two things should fix the errors. Now for the unwanted "features". You can hide elements in the svg using CSS. Open the file in a text editor. Just below the line that says /* global CSS selectors */ add: text.int, .scale { visibility: hidden } Hope that fixes things. [guest - Wed Aug 10 15:28:04 2005]: Show quoted text
> Version: Bio-Phylo-0.03 > Perl: v5.8.6 built for x86_64-linux-thread-multi > OS: 2.6.12-1.1390_FC4smp #1 SMP Tue Jul 5 20:09:48 EDT 2005 x86_64 > GNU/Linux > > Issues: > - Left side of cladogram is being cutoff. I can zoom out and get the > full image, but the entire tree should be rendered in the default > view. > - Negative branch lengths are not getting parsed. This causes > problems in phylograms, but the branch length also appears in leaf > label. > - Phylogram is displaying a wierd line shaped as a sideways "L" > labeled "mya" and with a 0 on the bottom. > - It would be nice to remove the node labels (n1, n2...) > > If you need my tree files or screenshots of the images produced, let > me know.
  Sat Oct 01 06:31:47 2005 rutgeraldo [...] gmail.com - Subject changed from 'Bugs/Requests' to 'Bugs fixed in version 0.07'
  Sat Oct 01 06:31:47 2005 rutgeraldo [...] gmail.com - Status changed from 'new' to 'resolved'