Subject: | Not able to run seeder_finder |
Date: | Fri, 16 Nov 2018 08:22:57 +0000 |
To: | "bug-Seeder [...] rt.cpan.org" <bug-Seeder [...] rt.cpan.org> |
From: | Sandip Kale <kale [...] ipk-gatersleben.de> |
Hello,
I am trying to identify motifs from my samples. There are 441 query sequences and 80K background sequences. I have generated the index and background distribution, but I got following error while running motif discovery.
Use of uninitialized value in subroutine entry at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 476, <IN> line 4096.
Use of uninitialized value $hd_to_seq[69] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Use of uninitialized value $hd_to_seq[69] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Use of uninitialized value $hd_to_seq[93] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Use of uninitialized value $hd_to_seq[93] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Use of uninitialized value $hd_to_seq[135] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Use of uninitialized value $hd_to_seq[135] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096.
Can't use an undefined value as an ARRAY reference at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 611, <IN> line 4096.
Can you please let me know the solution.
Thank you very much in advance
With best regards
Sandip
Sandip M. Kale, PhD
Research Group Genomics of Genetic Resources (GGR),
The Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK),
Corrensstr. 3, D-06466 Seeland, OT Gatersleben, Germany.
Email: kale@ipk-gatersleben.de<mailto:kale@ipk-gatersleben.de>
GeneBank2.0 - Genomics-based exploitation of wheat genetic resources for plant breeding<http://www.pflanzenforschung.de/de/plant-2030/fachinformationen/projektdatenbank/genomik-basierte-nutzbarmachung-genetischer-ressourcen-415#projektpflanzen>