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This queue is for tickets about the Seeder CPAN distribution.

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Id: 127652
Status: new
Priority: 0/
Queue: Seeder

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Owner: Nobody in particular
Requestors: kale [...] ipk-gatersleben.de
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Subject: Not able to run seeder_finder
Date: Fri, 16 Nov 2018 08:22:57 +0000
To: "bug-Seeder [...] rt.cpan.org" <bug-Seeder [...] rt.cpan.org>
From: Sandip Kale <kale [...] ipk-gatersleben.de>
Hello, I am trying to identify motifs from my samples. There are 441 query sequences and 80K background sequences. I have generated the index and background distribution, but I got following error while running motif discovery. Use of uninitialized value in subroutine entry at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 476, <IN> line 4096. Use of uninitialized value $hd_to_seq[69] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Use of uninitialized value $hd_to_seq[69] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Use of uninitialized value $hd_to_seq[93] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Use of uninitialized value $hd_to_seq[93] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Use of uninitialized value $hd_to_seq[135] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Use of uninitialized value $hd_to_seq[135] in array element at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 506, <IN> line 4096. Can't use an undefined value as an ARRAY reference at /home/kale/perl5/lib/perl5/Seeder/Finder.pm line 611, <IN> line 4096. Can you please let me know the solution. Thank you very much in advance With best regards Sandip ​ Sandip M. Kale, PhD Research Group Genomics of Genetic Resources (GGR), The Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, D-06466 Seeland, OT Gatersleben, Germany. Email: kale@ipk-gatersleben.de<mailto:kale@ipk-gatersleben.de> GeneBank2.0 - Genomics-based exploitation of wheat genetic resources for plant breeding<http://www.pflanzenforschung.de/de/plant-2030/fachinformationen/projektdatenbank/genomik-basierte-nutzbarmachung-genetischer-ressourcen-415#projektpflanzen>