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This queue is for tickets about the Bio-Roary CPAN distribution.

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The Basics
Id: 119202
Status: resolved
Priority: 0/
Queue: Bio-Roary
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Owner: Nobody in particular
Requestors: Rosemarie.Sadsad [...] health.nsw.gov.au
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Bug Information
Severity: (no value)
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Fixed in: (no value)

History Show all quoted text
  Sun Dec 11 08:41:55 2016 Rosemarie.Sadsad [...] health.nsw.gov.au - Ticket created
Subject: Empty accessory_binary_genes.fa
Date: Sun, 11 Dec 2016 13:41:36 +0000
To: "bug-Bio-Roary [...] rt.cpan.org" <bug-Bio-Roary [...] rt.cpan.org>
From: Rosemarie Sadsad <Rosemarie.Sadsad [...] health.nsw.gov.au>
Hi, I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, however the accessory_binary_genes.fa produced is empty. 0 Dec 8 22:56 accessory_binary_genes.fa 0 Dec 8 22:56 accessory_binary_genes.fa.newick.svg 3241 Dec 8 22:56 accessory_graph.dot 18876 Dec 8 22:56 accessory.header.embl 12959 Dec 8 22:56 accessory.tab 35 Dec 8 22:56 blast_identity_frequency.Rtab 92530 Dec 8 22:56 clustered_proteins 171501 Dec 8 22:56 core_accessory_graph.dot 377768 Dec 8 22:56 core_accessory.header.embl 354393 Dec 8 22:56 core_accessory.tab Linux login1 2.6.32-642.3.1.el6.x86_64 #1 SMP Tue Jul 12 18:30:56 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux Perl 5.24.0 Thanks, Rosie This message is intended for the addressee named and may contain confidential information. If you are not the intended recipient, please delete it and notify the sender. Views expressed in this message are those of the individual sender, and are not necessarily the views of NSW Health or any of its entities.
  Tue Dec 13 10:50:53 2016 AJPAGE [...] cpan.org - Correspondence added
Adding this query to our Github Issues page: https://github.com/sanger-pathogens/Roary/issues/296 Regards, Andrew On Sun Dec 11 08:41:55 2016, Rosemarie.Sadsad@health.nsw.gov.au wrote: Show quoted text
> Hi, > > I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, > however the accessory_binary_genes.fa produced is empty. > > 0 Dec 8 22:56 accessory_binary_genes.fa > 0 Dec 8 22:56 accessory_binary_genes.fa.newick.svg > 3241 Dec 8 22:56 accessory_graph.dot > 18876 Dec 8 22:56 accessory.header.embl > 12959 Dec 8 22:56 accessory.tab > 35 Dec 8 22:56 blast_identity_frequency.Rtab > 92530 Dec 8 22:56 clustered_proteins > 171501 Dec 8 22:56 core_accessory_graph.dot > 377768 Dec 8 22:56 core_accessory.header.embl > 354393 Dec 8 22:56 core_accessory.tab > > Linux login1 2.6.32-642.3.1.el6.x86_64 #1 SMP Tue Jul 12 18:30:56 UTC > 2016 x86_64 x86_64 x86_64 GNU/Linux > Perl 5.24.0 > > Thanks, > Rosie > > > This message is intended for the addressee named and may contain > confidential information. If you are not the intended recipient, > please delete it and notify the sender. > > Views expressed in this message are those of the individual sender, > and are not necessarily the views of NSW Health or any of its > entities.
  Tue Dec 13 10:50:54 2016 The RT System itself - Status changed from 'new' to 'open'
  Tue Dec 13 10:51:09 2016 AJPAGE [...] cpan.org - Status changed from 'open' to 'resolved'