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This queue is for tickets about the Bio-Graphics CPAN distribution.

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The Basics
Id: 117905
Status: resolved
Priority: 0/
Queue: Bio-Graphics
People
Owner: cjfields [...] uiuc.edu
Requestors: SREZIC [...] cpan.org
Cc:
AdminCc:
Bug Information
Severity: (no value)
Broken in: 2.39
Fixed in: (no value)

History Show all quoted text
  Sat Sep 17 03:56:48 2016 SREZIC [...] cpan.org - Ticket created
Subject: Bio::Coordinate::Pair has to be declared as a dependency
In the forthcoming bioperl release 1.7 some modules will be moved to separate distributions. Bio::Coordinate is one of them, see https://metacpan.org/source/CJFIELDS/BioPerl-1.007000_006/Changes#L55 Currently with bioperl 1.7 the test suite of Bio-Graphics may fail like this: MSG: The requested glyph class, ``arrow'' is not available: Can't locate Bio/Coordinate/Pair.pm in @INC (you may need to install the Bio::Coordinate::Pair module) (@INC contains: . /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/t/../lib /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/lib /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/arch /usr/perl5.25.4p/lib/site_perl/5.25.4/amd64-freebsd /usr/perl5.25.4p/lib/site_perl/5.25.4 /usr/perl5.25.4p/lib/5.25.4/amd64-freebsd /usr/perl5.25.4p/lib/5.25.4) at /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. Compilation failed in require at (eval 72) line 1.
  Fri Dec 16 15:58:42 2016 cjfields [...] uiuc.edu - Correspondence added
Should now be resolved with the latest CPAN release (v2.40). Thanks! On Sat Sep 17 02:56:48 2016, SREZIC wrote: Show quoted text
> In the forthcoming bioperl release 1.7 some modules will be moved to > separate distributions. Bio::Coordinate is one of them, see > https://metacpan.org/source/CJFIELDS/BioPerl-1.007000_006/Changes#L55 > > Currently with bioperl 1.7 the test suite of Bio-Graphics may fail > like this: > > MSG: The requested glyph class, ``arrow'' is not available: Can't > locate Bio/Coordinate/Pair.pm in @INC (you may need to install the > Bio::Coordinate::Pair module) (@INC contains: . > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/t/../lib > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/lib > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/arch > /usr/perl5.25.4p/lib/site_perl/5.25.4/amd64-freebsd > /usr/perl5.25.4p/lib/site_perl/5.25.4 > /usr/perl5.25.4p/lib/5.25.4/amd64-freebsd /usr/perl5.25.4p/lib/5.25.4) > at /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39- > 0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. > BEGIN failed--compilation aborted at > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39- > 0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. > Compilation failed in require at (eval 72) line 1.
  Fri Dec 16 15:58:43 2016 The RT System itself - Status changed from 'new' to 'open'
  Fri Dec 16 15:58:43 2016 cjfields [...] uiuc.edu - Taken
  Sat Sep 16 16:46:57 2017 cjfields [...] uiuc.edu - Correspondence added
On Fri Dec 16 14:58:42 2016, cjfields wrote: Show quoted text
> Should now be resolved with the latest CPAN release (v2.40). Thanks! > > On Sat Sep 17 02:56:48 2016, SREZIC wrote:
> > In the forthcoming bioperl release 1.7 some modules will be moved to > > separate distributions. Bio::Coordinate is one of them, see > > https://metacpan.org/source/CJFIELDS/BioPerl-1.007000_006/Changes#L55 > > > > Currently with bioperl 1.7 the test suite of Bio-Graphics may fail > > like this: > > > > MSG: The requested glyph class, ``arrow'' is not available: Can't > > locate Bio/Coordinate/Pair.pm in @INC (you may need to install the > > Bio::Coordinate::Pair module) (@INC contains: . > > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/t/../lib > > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/lib > > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39-0/blib/arch > > /usr/perl5.25.4p/lib/site_perl/5.25.4/amd64-freebsd > > /usr/perl5.25.4p/lib/site_perl/5.25.4 > > /usr/perl5.25.4p/lib/5.25.4/amd64-freebsd /usr/perl5.25.4p/lib/5.25.4) > > at /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39- > > 0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. > > BEGIN failed--compilation aborted at > > /home/cpansand/.cpan/build/2016091709/Bio-Graphics-2.39- > > 0/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. > > Compilation failed in require at (eval 72) line 1.
> >
  Sat Sep 16 16:46:58 2017 cjfields [...] uiuc.edu - Status changed from 'open' to 'resolved'