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The Basics
Id: 106756
Status: resolved
Priority: 0/
Queue: bioperl
People
Owner: Nobody in particular
Requestors: SREZIC [...] cpan.org
Cc:
AdminCc:
Bug Information
Severity: (no value)
Broken in: 1.6.924
Fixed in: (no value)

History Show all quoted text
  Sat Aug 29 09:27:02 2015 SREZIC [...] cpan.org - Ticket created
Subject: Can't redeclare "my" in "my" (test fails with perl 5.23.2)
The t/Tools/Alignment/Consed.t test fails because of a new deprecation in perl 5.23.2: # Failed test 'use Bio::Tools::Alignment::Consed;' # at t/Tools/Alignment/Consed.t line 19. # Tried to use 'Bio::Tools::Alignment::Consed'. # Error: Can't redeclare "my" in "my" at Bio/Tools/Alignment/Consed.pm line 1712, at end of line # Compilation failed in require at t/Tools/Alignment/Consed.t line 19. # BEGIN failed--compilation aborted at t/Tools/Alignment/Consed.t line 19. # Looks like you failed 1 test of 15. t/Tools/Alignment/Consed.t ............. Dubious, test returned 1 (wstat 256, 0x100) Failed 1/15 subtests
  Fri Apr 08 02:35:05 2016 SREZIC [...] cpan.org - Correspondence added
On 2015-08-29 09:27:02, SREZIC wrote: Show quoted text
> The t/Tools/Alignment/Consed.t test fails because of a new deprecation > in perl 5.23.2: > > # Failed test 'use Bio::Tools::Alignment::Consed;' > # at t/Tools/Alignment/Consed.t line 19. > # Tried to use 'Bio::Tools::Alignment::Consed'. > # Error: Can't redeclare "my" in "my" at > Bio/Tools/Alignment/Consed.pm line 1712, at end of line > # Compilation failed in require at t/Tools/Alignment/Consed.t line 19. > # BEGIN failed--compilation aborted at t/Tools/Alignment/Consed.t line > 19. > # Looks like you failed 1 test of 15. > t/Tools/Alignment/Consed.t ............. > Dubious, test returned 1 (wstat 256, 0x100) > Failed 1/15 subtests
A patch is available here: http://cpan.cpantesters.org/authors/id/S/SR/SREZIC/patches/BioPerl-1.006924-RT106756.patch
  Sun Jul 10 23:25:30 2016 cjfields [...] uiuc.edu - Correspondence added
Patch was added in an independent report from Debian, closing ticket On Fri Apr 08 01:35:05 2016, SREZIC wrote: Show quoted text
> On 2015-08-29 09:27:02, SREZIC wrote:
> > The t/Tools/Alignment/Consed.t test fails because of a new > > deprecation > > in perl 5.23.2: > > > > # Failed test 'use Bio::Tools::Alignment::Consed;' > > # at t/Tools/Alignment/Consed.t line 19. > > # Tried to use 'Bio::Tools::Alignment::Consed'. > > # Error: Can't redeclare "my" in "my" at > > Bio/Tools/Alignment/Consed.pm line 1712, at end of line > > # Compilation failed in require at t/Tools/Alignment/Consed.t line > > 19. > > # BEGIN failed--compilation aborted at t/Tools/Alignment/Consed.t > > line > > 19. > > # Looks like you failed 1 test of 15. > > t/Tools/Alignment/Consed.t ............. > > Dubious, test returned 1 (wstat 256, 0x100) > > Failed 1/15 subtests
> > A patch is available here: > > http://cpan.cpantesters.org/authors/id/S/SR/SREZIC/patches/BioPerl- > 1.006924-RT106756.patch
  Sun Jul 10 23:25:31 2016 The RT System itself - Status changed from 'new' to 'open'
  Sun Jul 10 23:25:36 2016 cjfields [...] uiuc.edu - Status changed from 'open' to 'resolved'