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This queue is for tickets about the Bio-Graphics CPAN distribution.

Report information
The Basics
Id: 103175
Status: resolved
Priority: 0/
Queue: Bio-Graphics
People
Owner: cjfields [...] uiuc.edu
Requestors: SREZIC [...] cpan.org
Cc:
AdminCc:
Bug Information
Severity: (no value)
Broken in: 2.39
Fixed in: (no value)

History Show all quoted text
  Sun Mar 29 10:34:56 2015 SREZIC [...] cpan.org - Ticket created
Subject: CGI.pm not declared as a dependency
In newer perls (e.g. perl 5.21.x) CGI.pm is not anymore part of the core modules, and therefore needs to be declared in Makefile.PL/Build.PL as a prerequisite. Otherwise the test suite fails: Can't locate CGI.pm in @INC (you may need to install the CGI module) (@INC contains: /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../lib /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/lib /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/arch /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/blib/lib /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/blib/arch /home/eserte/.cpan/build/GD-SVG-0.33-BlsIqs/blib/arch /home/eserte/.cpan/build/GD-SVG-0.33-BlsIqs/blib/lib /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/arch /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/lib /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/arch /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/lib /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/arch /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/lib /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/arch /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/lib /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/arch /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/lib /home/eserte/.cpan/build/Statistics-Descriptive-3.0608-XzK3Gf/blib/arch /home/eserte/.cpan/build/Statistics-Descriptive-3.0608-XzK3Gf/blib/lib /opt/perl-5.21.10t/lib/site_perl/5.21.10/x86_64-linux-thread-multi /opt/perl-5.21.10t/lib/site_perl/5.21.10 /opt/perl-5.21.10t/lib/5.21.10/x86_64-linux-thread-multi /opt/perl-5.21.10t/lib/5.21.10 .) at /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm line 121. BEGIN failed--compilation aborted at /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm line 121. Compilation failed in require at t/Wiggle.t line 16. BEGIN failed--compilation aborted at t/Wiggle.t line 16. # Looks like your test exited with 2 before it could output anything. t/Wiggle.t .......
  Fri Dec 16 16:00:13 2016 cjfields [...] uiuc.edu - Correspondence added
Should now be addressed with the latest CPAN release (v2.40). Will close the relevant tickets if no report to the contrary occurs within the next few weeks. Thanks! On Sun Mar 29 09:34:56 2015, SREZIC wrote: Show quoted text
> In newer perls (e.g. perl 5.21.x) CGI.pm is not anymore part of the > core modules, and therefore needs to be declared in > Makefile.PL/Build.PL as a prerequisite. Otherwise the test suite > fails: > > Can't locate CGI.pm in @INC (you may need to install the CGI module) > (@INC contains: /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../lib > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/lib > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/arch > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/blib/lib /tmpfs/.cpan- > build/Bio-Graphics-2.39-FcJ3Gc/blib/arch /home/eserte/.cpan/build/GD- > SVG-0.33-BlsIqs/blib/arch /home/eserte/.cpan/build/GD-SVG-0.33- > BlsIqs/blib/lib /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/arch > /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/lib > /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/arch > /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/lib > /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/arch > /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/lib > /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/arch > /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/lib > /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/arch > /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/lib > /home/eserte/.cpan/build/Statistics-Descriptive-3.0608- > XzK3Gf/blib/arch /home/eserte/.cpan/build/Statistics-Descriptive- > 3.0608-XzK3Gf/blib/lib /opt/perl- > 5.21.10t/lib/site_perl/5.21.10/x86_64-linux-thread-multi /opt/perl- > 5.21.10t/lib/site_perl/5.21.10 /opt/perl-5.21.10t/lib/5.21.10/x86_64- > linux-thread-multi /opt/perl-5.21.10t/lib/5.21.10 .) at /tmpfs/.cpan- > build/Bio-Graphics-2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm > line 121. > BEGIN failed--compilation aborted at /tmpfs/.cpan-build/Bio-Graphics- > 2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm line 121. > Compilation failed in require at t/Wiggle.t line 16. > BEGIN failed--compilation aborted at t/Wiggle.t line 16. > # Looks like your test exited with 2 before it could output anything. > t/Wiggle.t .......
  Fri Dec 16 16:00:13 2016 The RT System itself - Status changed from 'new' to 'open'
  Fri Dec 16 16:00:13 2016 cjfields [...] uiuc.edu - Taken
  Sat Sep 16 16:47:24 2017 cjfields [...] uiuc.edu - Correspondence added
On Fri Dec 16 15:00:13 2016, cjfields wrote: Show quoted text
> Should now be addressed with the latest CPAN release (v2.40). Will > close the relevant tickets if no report to the contrary occurs within > the next few weeks. Thanks! > > On Sun Mar 29 09:34:56 2015, SREZIC wrote:
> > In newer perls (e.g. perl 5.21.x) CGI.pm is not anymore part of the > > core modules, and therefore needs to be declared in > > Makefile.PL/Build.PL as a prerequisite. Otherwise the test suite > > fails: > > > > Can't locate CGI.pm in @INC (you may need to install the CGI module) > > (@INC contains: /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../lib > > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/lib > > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/t/../blib/arch > > /tmpfs/.cpan-build/Bio-Graphics-2.39-FcJ3Gc/blib/lib /tmpfs/.cpan- > > build/Bio-Graphics-2.39-FcJ3Gc/blib/arch /home/eserte/.cpan/build/GD- > > SVG-0.33-BlsIqs/blib/arch /home/eserte/.cpan/build/GD-SVG-0.33- > > BlsIqs/blib/lib /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/arch > > /home/eserte/.cpan/build/SVG-2.63-5OdhhO/blib/lib > > /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/arch > > /home/eserte/.cpan/build/GD-2.56-VE6ECm/blib/lib > > /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/arch > > /home/eserte/.cpan/build/BioPerl-1.6.924-TtKXlm/blib/lib > > /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/arch > > /home/eserte/.cpan/build/Data-Stag-0.14-xeEnxB/blib/lib > > /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/arch > > /home/eserte/.cpan/build/DBD-Pg-3.5.1-T9iywT/blib/lib > > /home/eserte/.cpan/build/Statistics-Descriptive-3.0608- > > XzK3Gf/blib/arch /home/eserte/.cpan/build/Statistics-Descriptive- > > 3.0608-XzK3Gf/blib/lib /opt/perl- > > 5.21.10t/lib/site_perl/5.21.10/x86_64-linux-thread-multi /opt/perl- > > 5.21.10t/lib/site_perl/5.21.10 /opt/perl-5.21.10t/lib/5.21.10/x86_64- > > linux-thread-multi /opt/perl-5.21.10t/lib/5.21.10 .) at /tmpfs/.cpan- > > build/Bio-Graphics-2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm > > line 121. > > BEGIN failed--compilation aborted at /tmpfs/.cpan-build/Bio-Graphics- > > 2.39-FcJ3Gc/t/../lib/Bio/Graphics/Wiggle/Loader.pm line 121. > > Compilation failed in require at t/Wiggle.t line 16. > > BEGIN failed--compilation aborted at t/Wiggle.t line 16. > > # Looks like your test exited with 2 before it could output anything. > > t/Wiggle.t .......
  Sat Sep 16 16:47:25 2017 cjfields [...] uiuc.edu - Status changed from 'open' to 'resolved'