| Subject: | CIGAR parsing error in Bio::DB::Sam |
| Date: | Fri, 9 Jan 2015 18:42:22 -0600 |
| To: | <bug-Bio-SamTools [...] rt.cpan.org> |
| From: | "Yun Heo" <to.yun.heo [...] gmail.com> |
Hello,
I am using the Bio::DB::Sam module and it seems that the padded_alignment
function of the module cannot recognize "X" and "=" in CIGAR strings. "M"s
in CIGAR strings can also be represented using "X" and "=" to distinguish
unmatched bases from matched ones. Could you check this problem?
Thank you for your help in advance.
Sincerely,
Yun